We have specified Xeon as the CPU, and based on it, we have made the specifications as high as possible within the budget.ġ CPUs per CPU is the best speed, but due to budget constraints and the fact that the number of CPU cores is not so large in this configuration, it is judged that the speed will not be affected. With a budget of 100 million yen for a single machine, we proposed a machine with specifications suitable for the customer's application. If you are using CLC Gx our workstations computers, it is your responsibility to back up all files.■ This is an article posted on June 2017, 11, so the content of the information may be out of date.Ĭustomer analysis software for next-generation sequences CLC Genomics Workbench I received an inquiry about the machine that runs the.
The USC Libraries Bioinformatics Service DO NOT provide storage services. If your dataset size is greater than 20 GB but less than 100 GB, you can only run the analysis over weekends (maximum session duration is 68 hours, starting at 1 pm on Friday and ending on 9 am the following Monday).If you absolutely need to use CLC’s proprietary aligner, and your dataset size is less than 20 GB, you can only run the analysis either during the weekday off-peak hours (maximum session duration is 20 hours, starting at 1 pm and ends at 9 am the following day), or over weekends.With several popular aligners, Partek Flow is a much faster and user-friendly solution for aligning raw sequencing reads.In principle, you can only use aligned reads as the input for DNA-seq or ChIP-seq data analyses in CLC Gx.Rules on DNA-seq or ChIP-seq Data Analysis. Small RNA-seq analysis is allowed in CLC Gx.If your RNA-seq dataset is great than 20 GB but less than 100 GB (fastq.gz files), you can only use the software over weekends and holidays (maximum session duration is 68 hours, starting at 1 pm on Friday and ending on 9 am the following Monday).If you absolutely need to use CLC’s RNA-seq tool, and your dataset size is less than 20 GB, you can only run the analysis either during the weekday off-peak hours (maximum session duration is 20 hours, starting at 1 pm and ends at 9 am the following day), or over weekends.Instead, you are strongly encouraged to take advantage of a powerful and speedy end-to-end RNA-seq workflow in Partek Flow. In principle, RNA-seq analysis is not allowed in CLC Gx IF the total size of the dataset exceeds 20 GB (.fastq.gz files).You must first request a special permission before analyzing a large dataset (>100GB) in CLC Gx.
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